"The unreserved apology that the game provided him in 2019 was too late, but, on behalf of our Commission and the AFL, I apologise unreservedly, again, for our failures during this period," the chairman said.
"Failure to call out racism and not standing up for Adam let down all Aboriginal and Torres Strait Islander players, past and present."
"We hope that there will be a time in the future when Adam will want to be connected to the game again."
"This is a decision for Adam - and Adam only - and we understand, and respect his choice."
When Goodes informed the AFL of his decision, Goyder stated that he did not go into depth about the reasons behind the choice, but claimed that "he did not want his decision to detract from the moment of the 2021 inductees."
RELATED: Adam Goodes turns down Hall of Fame nod
The inductees from the night included West Coast and Carlton superstar Chris Judd, Perth and Richmond legend Robert Wiley, WVFL great - the Hall's first female entrant - Debbie Lee, and St Kilda 323-game great, Nathan Burke.
Perth legend, Merv McIntosh, and South Australian icon, Jack Oatey, were elevated to Legend status in the Hall of Fame.